Vilo, Jaak: search on Z-Library

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1

Gene expression data analysis

Alvis Brazma, Jaak Vilo

Journal:

Year:

2000

Language:

english

File:

PDF, 586 KB

english, 2000

2

Fast probabilistic file fingerprinting for big data

Konstantin Tretyakov, Sven Laur, Geert Smant, Jaak Vilo, Pjotr Prins

Journal:

Year:

2013

Language:

english

File:

PDF, 697 KB

english, 2013

3

Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta

Metsalu, Tauno, Viltrop, Triin, Tiirats, Airi, Rajashekar, Balaji, Reimann, Ene, Kõks, Sulev, Rull, Kristiina, Milani, Lili, Acharya, Ganesh, Basnet, Purusotam, Vilo, Jaak, Mägi, Reedik, Metspalu, And

Journal:

Year:

2014

Language:

english

File:

PDF, 492 KB

english, 2014

4

Characterization of the Phosphoinositide 3-Kinase-Dependent Transcriptome in Murine Embryonic Stem Cells: Identification of Novel Regulators of Pluripotency

Michael P. Storm, Benjamin Kumpfmueller, Belinda Thompson, Raivo Kolde, Jaak Vilo, Oliver Hummel, Herbert Schulz, Melanie J. Welham

Journal:

Year:

2009

Language:

english

File:

PDF, 2.49 MB

english, 2009

5

Regulatory sequence analysis: application to the interpretation of gene expression

Jaak Vilo, Katja Kivinen

Journal:

European Neuropsychopharmacology

Year:

2001

Language:

english

File:

PDF, 738 KB

english, 2001

6

Predicting Gene Regulatory Elements in Silico on a Genomic Scale

Brāzma, Alvis, Jonassen, Inge, Vilo, Jaak, Ukkonen, Esko

Journal:

Genome Research

Year:

1998

Language:

english

File:

PDF, 327 KB

english, 1998

7

TRIB3 enhances cell viability during glucose deprivation in HEK293-derived cells by upregulating IGFBP2, a novel nutrient deficiency survival factor

Örd, Tiit, Örd, Daima, Adler, Priit, Vilo, Jaak, Örd, Tõnis

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

8

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data

Kolde, Raivo, Märtens, Kaspar, Lokk, Kaie, Laur, Sven, Vilo, Jaak

Journal:

Year:

2016

Language:

english

File:

PDF, 1.08 MB

english, 2016

9

Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records

Tasa, Tõnis, Krebs, Kristi, Kals, Mart, Mägi, Reedik, Lauschke, Volker M., Haller, Toomas, Puurand, Tarmo, Remm, Maido, Esko, Tõnu, Metspalu, Andres, Vilo, Jaak, Milani, Lili

Journal:

European Journal of Human Genetics

Year:

2018

Language:

english

File:

PDF, 2.13 MB

english, 2018

10

Gene expression data analysis

Alvis Brazma, Jaak Vilo

Journal:

Microbes and Infection

Year:

2001

Language:

english

File:

PDF, 144 KB

english, 2001

11

Autoimmune regulator is acetylated by transcription coactivator CBP/p300

Mario Saare, Ana Rebane, Balaji Rajashekar, Jaak Vilo, Pärt Peterson

Journal:

Experimental Cell Research

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

12

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

Jüri Reimand, Anu Aun, Jaak Vilo, Juan M Vaquerizas, Juhan Sedman, Nicholas M Luscombe

Journal:

Year:

2012

Language:

english

File:

PDF, 2.77 MB

english, 2012

13

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

Metsalu, Tauno, Vilo, Jaak

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 170 KB

english, 2015

14

Research Resource: Interactome of Human Embryo Implantation: Identification of Gene Expression Pathways, Regulation, and Integrated Regulatory Networks

Altmäe, Signe, Reimand, Jüri, Hovatta, Outi, Zhang, Pu, Kere, Juha, Laisk, Triin, Saare, Merli, Peters, Maire, Vilo, Jaak, Stavreus-Evers, Anneli, Salumets, Andres

Journal:

Molecular Endocrinology

Year:

2012

Language:

english

File:

PDF, 1.51 MB

english, 2012

15

Fast approximate hierarchical clustering using similarity heuristics

Meelis Kull, Jaak Vilo

Journal:

Year:

2008

Language:

english

File:

PDF, 1.85 MB

english, 2008

16

ArrayExpress: a public database of gene expression data at EBI

Philippe Rocca-Serra, Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Sergio Contrino, Jaak Vilo, Niran Abeygunawardena, Gaurab Mukherjee, Ele Holloway, Misha Kapushesky, Patrick

Journal:

Comptes Rendus Biologies

Year:

2003

Language:

english

File:

PDF, 71 KB

english, 2003

17

Gene Expression Profiles of Non-Small Cell Lung Cancer: Survival Prediction and New Biomarkers

Välk, Kristjan, Vooder, Tõnu, Kolde, Raivo, Reintam, Mari-Ann, Petzold, Cathleen, Vilo, Jaak, Metspalu, Andres

Journal:

Year:

2010

Language:

english

File:

PDF, 1.03 MB

english, 2010

18

DosOpt

Tasa, Tõnis, Metsvaht, Tuuli, Kalamees, Riste, Vilo, Jaak, Lutsar, Irja

Journal:

Therapeutic Drug Monitoring

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

19

Validating Fitbit Zip for monitoring physical activity of children in school: a cross-sectional study

Mooses, Kerli, Oja, Marek, Reisberg, Sulev, Vilo, Jaak, Kull, Merike

Journal:

BMC Public Health

Year:

2018

Language:

english

File:

PDF, 706 KB

english, 2018

20

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions

Reisberg, Sulev, Krebs, Kristi, Lepamets, Maarja, Kals, Mart, Mägi, Reedik, Metsalu, Kristjan, Lauschke, Volker M., Vilo, Jaak, Milani, Lili

Journal:

Genetics in Medicine

Year:

2018

Language:

english

File:

PDF, 520 KB

english, 2018

21

PAWER: protein array web exploreR

Fishman, Dmytro, Kuzmin, Ivan, Adler, Priit, Vilo, Jaak, Peterson, Hedi

Journal:

BMC Bioinformatics

Year:

2020

File:

PDF, 617 KB

2020

22

Peripheral gene expression profiling of CCK-4-induced panic in healthy subjects

Eduard Maron, Kristi Kallassalu, Anu Tammiste, Raivo Kolde, Jaak Vilo, Innar Tõru, Veiko Vasar, Jakov Shlik, Andres Metspalu

Journal:

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Year:

2010

Language:

english

File:

PDF, 95 KB

english, 2010

23

Gene Expression Signatures Defining Fundamental Biological Processes in Pluripotent, Early, and Late Differentiated Embryonic Stem Cells

Gaspar, John Antonydas, Doss, Michael Xavier, Winkler, Johannes, Wagh, Vilas, Hescheler, Jürgen, Kolde, Raivo, Vilo, Jaak, Schulz, Herbert, Sachinidis, Agapios

Journal:

Stem Cells and Development

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

24

Gene Expression-Based Approaches in Differentiation of Metastases and Second Primary Tumour

Vooder, Tõnu, Välk, Kristjan, Kolde, Raivo, Roosipuu, Retlav, Vilo, Jaak, Metspalu, Andres

Journal:

Case Reports in Oncology

Year:

2010

Language:

english

File:

PDF, 185 KB

english, 2010

25

Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins

Fishman, Dmytro, Kisand, Kai, Hertel, Christina, Rothe, Mike, Remm, Anu, Pihlap, Maire, Adler, Priit, Vilo, Jaak, Peet, Aleksandr, Meloni, Antonella, Podkrajsek, Katarina Trebusak, Battelino, Tadej, B

Journal:

Frontiers in Immunology

Year:

2017

Language:

english

File:

PDF, 7.36 MB

english, 2017

26

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells

Liina Tserel, Raivo Kolde, Ana Rebane, Kai Kisand, Tõnis Org, Hedi Peterson, Jaak Vilo, Pärt Peterson

Journal:

Year:

2010

Language:

english

File:

PDF, 1.73 MB

english, 2010

27

Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome-Scale Data

Patrick Kemmeren, Nynke L. van Berkum, Jaak Vilo, Theo Bijma, Rogier Donders, Alvis Brazma, Frank C.P. Holstege

Journal:

Year:

2002

Language:

english

File:

PDF, 347 KB

english, 2002

28

FUN-L: gene prioritization for RNAi screens: Fig. 1.

Lees, Jonathan G., Hériché, Jean-Karim, Morilla, Ian, Fernández, José M., Adler, Priit, Krallinger, Martin, Vilo, Jaak, Valencia, Alfonso, Ellenberg, Jan, Ranea, Juan A., Orengo, Christine

Journal:

Year:

2015

Language:

english

File:

PDF, 205 KB

english, 2015

29

Global transcriptomic analysis of murine embryonic stem cell-derived brachyury+ (T) cells

Michael Xavier Doss, Vilas Wagh, Herbert Schulz, Meelis Kull, Raivo Kolde, Kurt Pfannkuche, Tobias Nolden, Heinz Himmelbauer, Jaak Vilo, Jürgen Hescheler, Agapios Sachinidis

Journal:

Year:

2010

Language:

english

File:

PDF, 1.91 MB

english, 2010

30

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

Reimand, Jüri, Arak, Tambet, Adler, Priit, Kolberg, Liis, Reisberg, Sulev, Peterson, Hedi, Vilo, Jaak

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1003 KB

english, 2016

31

Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling

Sadam, Helle, Pihlak, Arno, Kivil, Anri, Pihelgas, Susan, Jaago, Mariliis, Adler, Priit, Vilo, Jaak, Vapalahti, Olli, Neuman, Toomas, Lindholm, Dan, Partinen, Markku, Vaheri, Antti, Palm, Kaia

Journal:

Year:

2018

Language:

english

File:

PDF, 2.96 MB

english, 2018

32

A public repository for DNA microarray-based gene expression data

Brazma, Alvis, Robinson, Alan, Vilo, Jaak

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 92 KB

english, 1999

33

[ACM Press the 20th ACM international conference - Glasgow, Scotland, UK (2011.10.24-2011.10.28)] Proceedings of the 20th ACM international conference on Information and knowledge management - CIKM '11 - Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs

Tretyakov, Konstantin, Armas-Cervantes, Abel, García-Bañuelos, Luciano, Vilo, Jaak, Dumas, Marlon

Year:

2011

Language:

english

File:

PDF, 679 KB

english, 2011

34

MethSurv: a web tool to perform multivariable survival analysis using DNA methylation data

Modhukur, Vijayachitra, Iljasenko, Tatjana, Metsalu, Tauno, Lokk, Kaie, Laisk-Podar, Triin, Vilo, Jaak

Journal:

Year:

2017

Language:

english

File:

PDF, 2.23 MB

english, 2017

35

Ranking Genes by Their Co-expression to Subsets of Pathway Members

Priit Adler, Hedi Peterson, Phaedra Agius, Jüri Reimand, Jaak Vilo

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 271 KB

english, 2009

36

Meta-analysis of microRNA expression in lung cancer

Võsa, Urmo, Vooder, Tõnu, Kolde, Raivo, Vilo, Jaak, Metspalu, Andres, Annilo, Tarmo

Journal:

International Journal of Cancer

Year:

2013

Language:

english

File:

PDF, 589 KB

english, 2013

37

MicroRNA Expression Profiles of Human Blood Monocyte-derived Dendritic Cells and Macrophages Reveal miR-511 as Putative Positive Regulator of Toll-like Receptor 4

Tserel, Liina, Runnel, Toomas, Kisand, Kai, Pihlap, Maire, Bakhoff, Lairi, Kolde, Raivo, Peterson, Hedi, Vilo, Jaak, Peterson, Pärt, Rebane, Ana

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 1.69 MB

english, 2011

38

Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes

Tserel, Liina, Kolde, Raivo, Limbach, Maia, Tretyakov, Konstantin, Kasela, Silva, Kisand, Kai, Saare, Mario, Vilo, Jaak, Metspalu, Andres, Milani, Lili, Peterson, Pärt

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

39

Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells

Peterson, Hedi, Abu Dawud, Raed, Garg, Abhishek, Wang, Ying, Vilo, Jaak, Xenarios, Ioannis, Adjaye, James

Journal:

Frontiers in Physiology

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

40

funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data

Kolberg, Liis, Kuzmin, Ivan, Adler, Priit, Vilo, Jaak, Peterson, Hedi

Journal:

Year:

2018

Language:

english

File:

PDF, 3.16 MB

english, 2018

41

Discovery of putative transcription factor binding sites from microarray-based gene expression profiles

Vilo, Jaak, Brazma, Alvis, Jonassen, Inge, Ukkonen, Esko

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 97 KB

english, 1999

42

A Preclinical Model for ERα-Positive Breast Cancer Points to the Epithelial Microenvironment as Determinant of Luminal Phenotype and Hormone Response

Sflomos, George, Dormoy, Valerian, Metsalu, Tauno, Jeitziner, Rachel, Battista, Laura, Scabia, Valentina, Raffoul, Wassim, Delaloye, Jean-Francois, Treboux, Assya, Fiche, Maryse, Vilo, Jaak, Ayyanan,

Journal:

Year:

2016

Language:

english

File:

PDF, 4.98 MB

english, 2016

43

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Raudvere, Uku, Kolberg, Liis, Kuzmin, Ivan, Arak, Tambet, Adler, Priit, Peterson, Hedi, Vilo, Jaak

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 1.18 MB

english, 2019

44

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme

Journal:

Year:

2014

Language:

english

File:

PDF, 391 KB

english, 2014

45

From Genomes to Vaccines: Leishmania as a Model

Renata Almeida, Alan Norrish, Mark Levick, David Vetrie, Tom Freeman, Jaak Vilo, Alasdair Ivens, Uta Lange, Carmel Stober, Sharon McCann and Jenefer M. Blackwell

Journal:

Philosophical Transactions Biological Sciences

Year:

2002

Language:

english

File:

PDF, 1.04 MB

english, 2002

46

DNA methylation changes in endometrium and correlation with gene expression during the transition from pre-receptive to receptive phase

Kukushkina, Viktorija, Modhukur, Vijayachitra, Suhorutšenko, Marina, Peters, Maire, Mägi, Reedik, Rahmioglu, Nilufer, Velthut-Meikas, Agne, Altmäe, Signe, Esteban, Francisco J., Vilo, Jaak, Zondervan,

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.95 MB

english, 2017

47

G = MAT: Linking Transcription Factor Expression and DNA Binding Data

Tretyakov, Konstantin, Laur, Sven, Vilo, Jaak, Brusic, Vladimir

Journal:

Year:

2011

Language:

english

File:

PDF, 244 KB

english, 2011

48

Identification of miR-374a as a prognostic marker for survival in patients with early-stage nonsmall cell lung cancer

Urmo Võsa, Tõnu Vooder, Raivo Kolde, Krista Fischer, Kristjan Välk, Neeme Tõnisson, Retlav Roosipuu, Jaak Vilo, Andres Metspalu, Tarmo Annilo

Journal:

Genes, Chromosomes and Cancer

Year:

2011

Language:

english

File:

PDF, 560 KB

english, 2011

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